Publications

The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research

Published in PeerJ, 2020

Bolduc, B.*, Hodgkins, S. B.*, Varner, R. K., Crill, P. M., McCalley, C. K., Chanton, J. P., Tyson, G. W., Riley, W. J., Palace, M., Duhaime, M. B., Hough, M. A., IsoGenie Project Coordinators, IsoGenie Project Team, A2A Project Team, Saleska, S. R., Sullivan, M. B., & Rich, V. I. (2020). The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research. PeerJ, 8, e9467. *These authors contributed equally. https://doi.org/10.7717/peerj.9467

Tropical peatland carbon storage linked to global latitudinal trends in peat recalcitrance

Published in Nature Communications, 2018

Hodgkins, S. B., Richardson, C. J., Dommain, R., Wang, H., Glaser, P. H., Verbeke, B., Winkler, B. R., Cobb, A. R., Rich, V. I., Missilmani, M., Flanagan, N., Ho, M., Hoyt, A. M., Harvey, C. F., Vining, S. R., Hough, M. A., Moore, T. R., Richard, P. J. H., De La Cruz, F. B., Toufaily, J., Hamdan, R., Cooper, W. T., & Chanton, J. P. (2018). Tropical peatland carbon storage linked to global latitudinal trends in peat recalcitrance. Nat. Commun., 9(1), 3640. https://doi.org/10.1038/s41467-018-06050-2

Elemental composition and optical properties reveal changes in dissolved organic matter along a permafrost thaw chronosequence in a subarctic peatland

Published in Geochimica et Cosmochimica Acta, 2016

Hodgkins, S. B., Tfaily, M. M., Podgorski, D. C., McCalley, C. K., Saleska, S. R., Crill, P. M., Rich, V. I., Chanton, J. P., & Cooper, W. T. (2016). Elemental composition and optical properties reveal changes in dissolved organic matter along a permafrost thaw chronosequence in a subarctic peatland. Geochim. Cosmochim. Acta, 187, 123–140. https://doi.org/10.1016/j.gca.2016.05.015

Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production

Published in Proceedings of the National Academy of Sciences of the United States of America, 2014

Hodgkins, S. B., Tfaily, M. M., McCalley, C. K., Logan, T. A., Crill, P. M., Saleska, S. R., Rich, V. I., & Chanton, J. P. (2014). Changes in peat chemistry associated with permafrost thaw increase greenhouse gas production. Proc. Natl. Acad. Sci. USA, 111(16), 5819–5824. https://doi.org/10.1073/pnas.1314641111

Microbial community analyses inform geochemical reaction network models for predicting pathways of greenhouse gas production

Published in Frontiers in Earth Science, 2019

Wilson, R. M., Neumann, R. B., Crossen, K. B., Raab, N. M., Hodgkins, S. B., Saleska, S. R., Bolduc, B., Woodcroft, B. J., Tyson, G. W., Chanton, J. P., & Rich, V. I. (2019). Microbial community analyses inform geochemical reaction network models for predicting pathways of greenhouse gas production. Front. Earth Sci., 7, 59. https://doi.org/10.3389/feart.2019.00059

Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov.

Published in Systematic and Applied Microbiology, 2019

Martinez, M. A., Woodcroft, B. J., Ignacio Espinoza, J. C., Zayed, A. A., Singleton, C. M., Boyd, J. A., Li, Y.-F., Purvine, S., Maughan, H., Hodgkins, S. B., Anderson, D., Sederholm, M., Temperton, B., Bolduc, B., IsoGenie Project Coordinators, Saleska, S. R., Tyson, G. W., & Rich, V. I. (2019). Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca. Cryosericales ord. nov., Ca. Cryosericaceae fam. nov., comprising the four species Cryosericum septentrionale gen. nov. sp. nov., Ca. C. hinesii sp. nov., Ca. C. odellii sp. nov., Ca. C. terrychapinii sp. nov. Syst. Appl. Microbiol., 42(1), 54–66. https://doi.org/10.1016/j.syapm.2018.12.003

Host-linked soil viral ecology along a permafrost thaw gradient

Published in Nature Microbiology, 2018

Emerson, J. B., Roux, S., Brum, J. R., Bolduc, B., Woodcroft, B. J., Jang, H. B., Singleton, C. M., Solden, L. M., Naas, A. E., Boyd, J. A., Hodgkins, S. B., Wilson, R. M., Trubl, G., Li, C., Frolking, S., Pope, P. B., Wrighton, K. C., Crill, P. M., Chanton, J. P., Saleska, S. R., Tyson, G. W., Rich, V. I., & Sullivan, M. B. (2018). Host-linked soil viral ecology along a permafrost thaw gradient. Nat. Microbiol., 3(8), 870–880. https://doi.org/10.1038/s41564-018-0190-y

Genome-centric view of carbon processing in thawing permafrost

Published in Nature, 2018

Woodcroft, B. J.*, Singleton, C. M.*, Boyd, J. A., Evans, P. N., Emerson, J. B., Zayed, A. A. F., Hoelzle, R. D., Lamberton, T. O., McCalley, C. K., Hodgkins, S. B., Wilson, R. M., Purvine, S. O., Nicora, C. D., Li, C., Frolking, S., Chanton, J. P., Crill, P. M., Saleska, S. R., Rich, V. I., & Tyson, G. W. (2018). Genome-centric view of carbon processing in thawing permafrost. Nature, 560(7716), 49–54. *These authors contributed equally. https://doi.org/10.1038/s41586-018-0338-1

Comparison of dialysis and solid-phase extraction for isolation and concentration of dissolved organic matter prior to Fourier transform ion cyclotron resonance mass spectrometry

Published in Analytical and Bioanalytical Chemistry, 2012

Tfaily, M. M., Hodgkins, S., Podgorski, D. C., Chanton, J. P., & Cooper, W. T. (2012). Comparison of dialysis and solid-phase extraction for isolation and concentration of dissolved organic matter prior to Fourier transform ion cyclotron resonance mass spectrometry. Anal. Bioanal. Chem., 404(2), 447–457. https://doi.org/10.1007/s00216-012-6120-6